DeNovoGUI

DeNovoGUI provides an easy to use graphical front end to two algorithms for de novo sequencing of MS//MS spectra: PepNovo+ and DirecTag.

The software is being developed by Thilo Muth, Marc Vaudel and Harald Barsnes. For any questions, feel free to contact the authors at the DeNovoGUI Google Group.

For news and updates visit the DeNovoGUI website: http://denovogui.googlecode.com.

Please cite DeNovoGUI as: Muth et al.: J Proteome Res. 2014 Feb 7;13(2):1143-6.

Example Dataset

DeNovoGUI includes a realistic example of a plant proteomics datasets. It consists of 30,289 MS//MS spectra from an Arabidopsis thaliana whole leaf proteome. The obtained tryptic peptides were separated via ion-pair reversed-phase high-performance liquid chromatography and were measured on an LTQ Orbitrap XL mass spectrometer using high-resolution precursor ion selection followed by CID fragmentation.

For any further questions about the dataset, please contact Lisa Weilnboeck.

PepNovo+ License

Copyright 2007,2008,2009 The Regents of the University of California All Rights Reserved.

Permission to use, copy, modify and distribute any part of this program for educational, research and non-profit purposes, by non-profit institutions only, without fee, and without a written agreement is hereby granted, provided that the above copyright notice, this paragraph and the following three paragraphs appear in all copies.

Those desiring to incorporate this work into commercial products or use for commercial purposes should contact the Technology Transfer & Intellectual Property Services, University of California, San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910, Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu.

IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF THE UNIVERSITY OF CALIFORNIA HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

THE SOFTWARE PROVIDED HEREIN IS ON AN "AS IS" BASIS, AND THE UNIVERSITY OF CALIFORNIA HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. THE UNIVERSITY OF CALIFORNIA MAKES NO REPRESENTATIONS AND EXTENDS NO WARRANTIES OF ANY KIND, EITHER IMPLIED OR EXPRESS, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT THE USE OF THE SOFTWARE WILL NOT INFRINGE ANY PATENT, TRADEMARK OR OTHER RIGHTS.

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